Metabolism, Cellular Respiration and Photosynthesis
General
- Biochemistry Online: An Approach Based on Chemical Logic - Biochemistry within the framework of chemical principles and logic. (Henry Jakubowski, College of St. Benedict/St. John's University)
- ATP and Oxidative Phosphorylation Reactions
- Biological Oxidation Reactions - Dehydrogenases, Mono and Dioxygenases, and Oxidases
- Chemistry of Dioxygen
- Energy Transduction: Uses of ATP
- Photosynthesis: The Light Reaction
- The Biology Project: Biochemistry - Basic tutorial on biochemistry. (University of Arizona) (Beginner's Level)
- Glycolysis - Basic introduction to the reactions and pathway of glycolysis.
- The Main Metabolic Pathways - Map of main metabolic pathways, such as glycolysis, the citric acid cycle, fatty acid synthesis and oxidation, amino acid metabolism and the urea cycle, with chemical figures.
- Metabolic Pathways of Biochemistry - Graphical representation of metabolic pathways that are crucial to human metabolism, including 2-D and 3-D depictions.
- Kimball's Biology Pages - Mini-essays on a number of biological topics with a lot of cell biology. (Beginner's Level)
- Cellular Respiration - Basic information on cellular respiration (mitochondria, the citric acid cycle, the respiratory chain, the chemiosmotic hypothesis for ATP synthesis, ATP).
- Metabolism - Basic introduction to metabolism (catabolism, anabolism and nutrition).
- The Medical Biochemistry Page - An excellent biochemistry tutorial with information on a broad range of biochemical pathways. (Michael W. King, Indiana University School of Medicine)
- Amino Acid Metabolism
- AMPK: Master Metabolic Regulator
- Biochemistry of Carbohydrates
- Cholesterol and Bile Metabolism
- Eicosanoid Metabolism
- Fatty Acid Oxidation
- Glycogen Metabolism
- Glycolysis
- Gluconeogenesis
- Glucuronate Metabolism
- Heme and Porphyrin Metabolism
- Inborn Errors of Metabolism
- Metabolism of Ethanol
- Metabolism of Lipids
- Metabolism of Major Non-Glucose Sugars
- Nitrogen Metabolism and the Urea Cycle
- Nucleotide Metabolism
- Oxidative Phosphorylation
- Pentose Phosphate Pathway
- Phospholipid Metabolism
- Regulation of Blood Glucose Levels
- Specialized Products of Amino Acids
- Sphingolipid Metabolism
- The TCA Cycle and PDH
- Type 1 and 2 Diabetes Mellitus
- Vitamins and Coenzyme
- On-Line Biology Book - Comprehensive introduction to biology at the "college freshman" level by M.J. Farabee. (Beginner's Level)
- ATP and Biological Energy
- Cellular Metabolism and Fermentation
- The WIT Project - "The WIT Project attempts to produce metabolic reconstructions for sequenced (or partially sequenced) genomes." (Argonne National Laboratory)
See also the Enzymes and Proteins: Biogenesis to Degradation pages.
Metabolic Pathway Databases (Data Collections on Metabolic Pathways)
- BioCyc - "BioCyc is a collection of Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism, with the exception of the MetaCyc database, which is a reference source on metabolic pathways from many organisms."
- Biological Biochemical Image Database - Images of biological pathways, macromolecular structures, gene families and cellular relationships. (National Institute of Aging)
- ExPASy - Biochemical Pathways
- Kyoto Encyclopedia of Genes and Genomes (KEGG) - Graphical and hypertext-based information on biochemical pathways, including metabolic and regulatory pathways (for instance, cell cycle and growth factor signaling).
- Metabolic Database - Database listing metabolic intermediates and their relationships.
See also the Databases and Simulations section of the Systems Biology page.
Photosynthesis
- An Introduction to Photosynthesis and Its Applications (Wim Vermas, Arizona State University) (Beginner's Level)
- On-Line Biology Book: Photosynthesis - A tutorial on photosynthesis by M.J. Farabee. (Beginner's Level)
- Photosynthesis, Energy and Life - A beginner's guide to photosynthesis. (Beginner's Level)
- Photosynthesis Center - Resources in photosynthesis, basic and advanced information, links to conference, journal and lab sites. (Arizona State University)
- Photosynthetic Antennas and Reaction Centers: Current Understanding and Prospects for Improvement - "A brief introduction to the principles, structures and kinetic processes that take place in natural photosynthetic reaction center complexes is presented." (Robert Blankenship, Arizona State University)
- The Photosynthetic Process - An introduction to photosynthesis that "focuses on the structure of the photosynthetic machinery and the reactions essential for transforming light energy into chemical energy." (John Whitmarsh and Govind Jee, University of Illinois, Urbana-Champaign)
- WWW Virtual Library of Botany
Specific Proteins
- ATP Synthase - A Splendid Molecular Machine - A site devoted to the F0F1-ATP synthase. (Boris A. Feniouk, University of Osnabrück , Germany)
(Collections of Enzyme Functional and Nomenclature Data)
(Data Collections on Regulatory Pathways)
Discussion Groups
- Usenet newsgroup archives from BIOSCI/bionet (can also be accessed through Google Groups: bionet):
- BTK-MCA/bionet.metabolic-reg - Kinetics and thermodynamics at the cellular level.
- EMF-BIO/bionet.emf-bio - Interactions of electromagnetic fields with biological systems.
- FREERAD/bionet.molecules.free-radicals - Research on free radicals in biology and medicine.
- N2-FIXATION/bionet.biology.n2-fixation - Biological nitrogen fixation research.
- P450/bionet.molecules.p450 - Research on cytochrome P450.
- PHOTOSYNTHESIS/bionet.photosynthesis - Research on photosynthesis.
See also the Discussion Groups section of the General Resources and Tutorials page.
Labs Studying
@ 1999-2017 Gabriel Fenteany 
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